From 6633ba3194bf13e3773be925ab6f038dedc0da74 Mon Sep 17 00:00:00 2001
From: LauraU123 <laura.urbanska@stud.unibas.ch>
Date: Fri, 2 Dec 2022 11:20:13 +0100
Subject: [PATCH] fixed invalid character error
---
scripts/new_exe.py | 9 ---------
1 file changed, 9 deletions(-)
diff --git a/scripts/new_exe.py b/scripts/new_exe.py
index c074272..13e5e8f 100644
--- a/scripts/new_exe.py
+++ b/scripts/new_exe.py
@@ -5,28 +5,19 @@ import representative as rtcl
import poisson_sampling as ps
import writegtf as gt
import match_reprtranscript_expressionlevel as ma
-​
def exe(input_file, csv, gtf, transcript_nr,input_free = True):
file_name,source_pathway_name_2,deposit_pathway_name_2 = te.extract_transcript(input_file, Input_free = input_free)
inter_mediate_file_directory = input_file +"_intermediate_file.txt"
-​
print("Transcripts are filtered based on transcript score. Please wait...")
-​
pre_filter_representative_transcripts_dict = rtcl.find_repr_by_SupportLevel(inter_mediate_file_directory)
-​
print("Transcripts filtered\n")
elf.exon_length_filter(file_name,gen_dict= pre_filter_representative_transcripts_dict, Input_free = input_free)
-​
tsv_input = ma.output_tsv()
print("Poisson sampling of transcripts")
ps.transcript_sampling(transcript_nr, tsv_input, csv)
print("output csv file ready")
-
print("writing output gtf file")
gt.gtf_file_writer(input_file, csv, gtf)
-​
-​
-​
if __name__ == '__main__':
parser = argparse.ArgumentParser(
description="transcript sampler",
--
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