From b9819c40421ae898625d2db95acbade975d6489b Mon Sep 17 00:00:00 2001
From: LauraU123 <laura.urbanska@stud.unibas.ch>
Date: Fri, 2 Dec 2022 12:15:31 +0100
Subject: [PATCH] updated README

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index 64a092f..6ea7f8f 100644
--- a/README.md
+++ b/README.md
@@ -7,4 +7,6 @@ This workflow takes as input:
  
  The output is a trancript sample gtf file and csv file containing transcript IDs and counts.
  
+ The workflow can be run via the command line as
  
+ python scripts/exe.py --annotation {gtf input file} --output_csv {output csv file} --transcript_number {number of transcripts} --output_gtf {output gtf file} --input_csv {input csv file}
-- 
GitLab