diff --git a/environment.yml b/environment.yml new file mode 100644 index 0000000000000000000000000000000000000000..b7d8c9eca63142afe6d725de9fc4a6dfe88e1db8 --- /dev/null +++ b/environment.yml @@ -0,0 +1,18 @@ +name: transcript-sequence-extractor +channels: + - defaults + - conda-forge + - bioconda +dependencies: + - python=3.10 + - pandas=1.5 + - numpy=1.23 + - gtfparse=1.2 + - pip=22.3 + - pytest=7.2 + - coverage=6.5 + - black=22.10 + - flake8=6.0 + - flake8-docstrings=1.6 + - mypy=0.991 + - pylint=2.15 diff --git a/requirements.txt b/requirements.txt index ed4c674a110399054f5274a7730f62f745efc1b3..4ce7c7f16bf931b4d0893cf868c0e1f973559b74 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,3 +1,3 @@ pandas ~= 1.5 numpy ~= 1.23 - gtfparse ~= 1.3 + gtfparse ~= 1.2 diff --git a/requirements_dev.txt b/requirements_dev.txt index 4360923ac5b030fc34743142d9a850b830995e7d..ab4c4964f11ad764a889bccac4d6a17fdf1cd12e 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,7 +1,7 @@ -pytest -coverage -black -flake8 -flake8-docstrings -mypy -pylint +pytest~=7.2 +coverage~=6.5 +black~=22.10 +flake8~=6.0 +flake8-docstrings~=1.6 +mypy~=0.991 +pylint~=2.15