From 6adfc082a0fbcc35f50ef2b7303e32707d24d24c Mon Sep 17 00:00:00 2001
From: Samuel Mondal <samuel.mondal@unibas.ch>
Date: Sat, 26 Nov 2022 23:53:16 +0100
Subject: [PATCH] Changing output from a list to a list of tuples
---
sequence_extractor/exon_concatenation.py | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/sequence_extractor/exon_concatenation.py b/sequence_extractor/exon_concatenation.py
index 666c303..d95ef0a 100644
--- a/sequence_extractor/exon_concatenation.py
+++ b/sequence_extractor/exon_concatenation.py
@@ -20,10 +20,8 @@ def exon_concatenation(
if annotation[-1] == line1[0:16]:
read += line2[:-1]
elif annotation[-1] != line1[0:16]:
- fasta_format_list.append(annotation[-1])
- fasta_format_list.append(read)
+ fasta_format_list.append((annotation[-1],read))
annotation.append(line1[0:16])
read = line2[:-1]
- fasta_format_list.append(annotation[-1])
- fasta_format_list.append(read)
+ fasta_format_list.append((annotation[-1],read))
return fasta_format_list
--
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