diff --git a/sequence_extractor/exon_concatenation.py b/sequence_extractor/exon_concatenation.py index 4a2f96055f03a0a250b1183217fc948042c3b472..c5348ac1542304c2246ec4df4036a9fe99ac1d69 100644 --- a/sequence_extractor/exon_concatenation.py +++ b/sequence_extractor/exon_concatenation.py @@ -2,14 +2,12 @@ def exon_concatenation: fa = open("fasta.fa",'r') lines = fa.readlines() for x in range(int(len(lines)/2)): - if x == 0: - annotation = lines[0] - read = lines[1] - if x >= 1: - if lines[2*x] == lines[2*(x-1)]: - read+= lines[(2*x)+1] - else: - return annotation - return read - annotation = lines[2*x] - read = lines[(2*x)+1] + if x == 0: + annotation = lines[0] + read = lines[1] + if x >= 1: + if lines[2*x] == lines[2*(x-1)]: + read+= lines[(2*x)+1] + else: + annotation = lines[2*x] + read = lines[(2*x)+1]