From 7e29e0ddf170e3ceccf3a2eabce74834e938f86a Mon Sep 17 00:00:00 2001
From: Samuel Mondal <samuel.mondal@unibas.ch>
Date: Mon, 14 Nov 2022 23:51:20 +0100
Subject: [PATCH] indentation change
---
sequence_extractor/exon_concatenation.py | 20 +++++++++-----------
1 file changed, 9 insertions(+), 11 deletions(-)
diff --git a/sequence_extractor/exon_concatenation.py b/sequence_extractor/exon_concatenation.py
index 4a2f960..c5348ac 100644
--- a/sequence_extractor/exon_concatenation.py
+++ b/sequence_extractor/exon_concatenation.py
@@ -2,14 +2,12 @@ def exon_concatenation:
fa = open("fasta.fa",'r')
lines = fa.readlines()
for x in range(int(len(lines)/2)):
- if x == 0:
- annotation = lines[0]
- read = lines[1]
- if x >= 1:
- if lines[2*x] == lines[2*(x-1)]:
- read+= lines[(2*x)+1]
- else:
- return annotation
- return read
- annotation = lines[2*x]
- read = lines[(2*x)+1]
+ if x == 0:
+ annotation = lines[0]
+ read = lines[1]
+ if x >= 1:
+ if lines[2*x] == lines[2*(x-1)]:
+ read+= lines[(2*x)+1]
+ else:
+ annotation = lines[2*x]
+ read = lines[(2*x)+1]
--
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