diff --git a/sequence_extractor/cli.py b/sequence_extractor/cli.py index c0e2e62219376cbb4d6f038ab8bde6c69c9e60ed..55c0393fc93670cfb345b41353efc74620934471 100644 --- a/sequence_extractor/cli.py +++ b/sequence_extractor/cli.py @@ -21,7 +21,7 @@ def main(): LOG.info("sequence_extractor begins") exon_extraction_from_gtf() fasta_list = exon_concatenation(args.) - final_list = polyA_addition_to_fasta_list(fasta_list) + final_list = poly_a_addition_to_fasta_list(fasta_list) list_to_file(final_list,args.output_file_name) LOG.info("sequence_extractor ends") diff --git a/tests/test_polyA.py b/tests/test_polyA.py deleted file mode 100644 index ead1507e6b262dae6b705401d8b34ed61bbf9309..0000000000000000000000000000000000000000 --- a/tests/test_polyA.py +++ /dev/null @@ -1,3 +0,0 @@ -import pytest - -from polyA import poly diff --git a/tests/test_poly_a.py b/tests/test_poly_a.py new file mode 100644 index 0000000000000000000000000000000000000000..dc89197b9d69374bb1b165fdf37c088e13b9c800 --- /dev/null +++ b/tests/test_poly_a.py @@ -0,0 +1,3 @@ +import pytest + +from poly_a import poly_a_generator, poly_a_addition_to_fasta_list