From 7409d11c0ea8f195fc0e3c14f59cf0a9524cdd36 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andri=20Fr=C3=A4nkl?= <andri.fraenkl@unibas.ch>
Date: Wed, 21 Dec 2022 10:10:43 +0000
Subject: [PATCH] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 8bade1e..8db9564 100644
--- a/README.md
+++ b/README.md
@@ -39,7 +39,7 @@ To generate the sampled transcripts, open a new shell, activate your environment
 ```
 conda activate transcript-structure-generator
 
-transcript-generator --prob_inclusion <probability_inclusion> [--log "INFO"] <transcripts_file> <annotations_file>
+transcript-generator --prob-inclusion <probability_inclusion> [--log "INFO"] <transcripts_file> <annotations_file>
 ```
 
 where the transcripts file should be csv-formatted, the annotation file gtf-formatted and the inclusion probability for introns a float in the range [0,1]. The log parameter is optional and can be one of `["CRITICAL", "ERROR", "WARNING", "INFO", "DEBUG"]`. The default is `INFO`.
-- 
GitLab