From fe7095af61a8ddfbca62b0d2c0c0e7a9a2247997 Mon Sep 17 00:00:00 2001
From: Michael Zimmermann <michael.zimmermann@unibas.ch>
Date: Mon, 21 Nov 2022 17:30:12 +0100
Subject: [PATCH] Corrections from Larissa
---
tsg/main.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/tsg/main.py b/tsg/main.py
index f50eb80..e7bd9db 100644
--- a/tsg/main.py
+++ b/tsg/main.py
@@ -11,7 +11,7 @@ LOG = logging.getLogger(__name__)
def read_abundances(transcripts_file: str) -> pd.DataFrame:
- """Read file of abundance of transcripts into dataframe.
+ """Read transcript-abundance file into dataframe.
Args:
transcripts_file (str): Input filename
@@ -32,7 +32,7 @@ def read_abundances(transcripts_file: str) -> pd.DataFrame:
def filter_df(df: pd.DataFrame, transcripts: list = []) -> pd.DataFrame:
- """Filter annotations to include only exons with the highest transcript support level, i.e. (TSL1).
+ """Filter annotations to include only exons with the highest transcript support level, i.e. TSL1.
`feature` column is filtered on value "exon" and
`free_text` column is filtered to include the string denoting the highest transcript support level
--
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