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Riboseq Pipeline

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

Copy of of the original IPLT repository

Copy of of the original IPLT repository

MIRZA-G pipeline code written for Jobber.

Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).