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Open-Source Computational Structural Biology Framework
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The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.
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General purpose Snakemake RNA-seq analysis workflow
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A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.
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An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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Python tool to reduce size and redundancy of phylogenetic datasets
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Python script that can be used to compress a directory including all its files and subdirectories.
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Generates an ASCII-style pileup of read alignments in one or more BAM files against one or more regions specified in a BED file
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Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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ImageJ-macro to batch analyse all PSF images in a folder
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