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Open-Source Computational Structural Biology Framework

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

ProMod3 - A Versatile Homology Modelling Toolbox

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

Material and data for the workshop in South Africa (2018)

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

General purpose Snakemake RNA-seq analysis workflow

QMEAN - Qualitative Model Energy ANalysis

Python tool to reduce size and redundancy of phylogenetic datasets

Copy of of the original IPLT repository

Python script that can be used to compress a directory including all its files and subdirectories.

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

ImageJ-macro to batch analyse all PSF images in a folder

package to correct CTF

Data integration and annotation workflows

HTSinfer is a computational tool to infer meta-data from High Throughput Sequencing (HTS) data.

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.