Open-Source Computational Structural Biology Framework

ProMod3 - A Versatile Homology Modelling Toolbox

TECtool is a method that uses mRNA and 3’ end sequencing data to identify novel terminal exons.

QMEAN - Qualitative Model Energy ANalysis

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

Django/REST back-end for the Krini project

Angular front-end for the Krini project

Wrapper repository for the entire Krini project

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

scripts, pipelines and documentation to run PAQR and KAPAC

KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes

PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

🐍 ☕ 🔩 🔧 A collection of commonly used Python helper functions.

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

CWL execution engine for the Krini project

Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).

Django web framework workshop, Monday 29th June from 10:15 to 12:00 in the sky lounge.

ImageJ-macro to batch analyse all PSF images in a folder

Wrapper repository for the entire Krini project

singularity definition files