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Tools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.

xml input files for Beast, associated with manuscript: The Molecular Clock of Mycobacterium tuberculosis. DOI: https://doi.org/10.1371/journal.ppat.1008067

Analysis with exponential growth population prior, and 1/x prior on the clock rate

imcf-adaptation of Myosoft, a Fiji script that identifies muscle fibers in images of sections

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

Open-Source Computational Structural Biology Framework

A Snakemake workflow to assemble genomes from long reads and annotate them

scripts, pipelines and documentation to run PAQR and KAPAC

KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes

PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

this is just an auxiliary repo to provide all scripts and auxiliary files that are part of the model pipeline

Pathways allows you to compute importance scores for a a list of metabolic pathways.

package to correct CTF

ProMod3 - A Versatile Homology Modelling Toolbox

Benchmark pipelines for the ProMod3 modelling engine