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Jean-Guillaume Piccinali / Mirror Test
GNU General Public License v3.0 or laterUpdated -
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schwede / Mobius
Apache License 2.0Mobius - A python package for peptide optimization using Bayesian optimization
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schwede / modelcif-converters
MIT LicenseTools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.
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xml input files for Beast, associated with manuscript: The Molecular Clock of Mycobacterium tuberculosis. DOI: https://doi.org/10.1371/journal.ppat.1008067
Analysis with exponential growth population prior, and 1/x prior on the clock rate
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imcf / myosoft-imcf
GNU General Public License v3.0 onlyimcf-adaptation of Myosoft, a Fiji script that identifies muscle fibers in images of sections
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imcf / noisee
GNU General Public License v3.0 onlyAn easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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zavolan_public / PAQR_KAPAC
GNU General Public License v2.0 or laterscripts, pipelines and documentation to run PAQR and KAPAC
KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes
PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
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this is just an auxiliary repo to provide all scripts and auxiliary files that are part of the model pipeline
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TBRU / pathways
MIT LicensePathways allows you to compute importance scores for a a list of metabolic pathways.
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zavolan_group / tools / Priming site predictor
MIT LicenseUpdated -