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xml input files for Beast, associated with manuscript: The Molecular Clock of Mycobacterium tuberculosis. DOI: https://doi.org/10.1371/journal.ppat.1008067
Analysis with exponential growth population prior, and 1/x prior on the clock rate
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schwede / modelcif-converters
MIT LicenseTools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.
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schwede / Mobius
Apache License 2.0Mobius - A python package for peptide optimization using Bayesian optimization
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Jean-Guillaume Piccinali / Mirror Test
GNU General Public License v3.0 or laterUpdated -
TBRU / MetagenomicSnake
MIT LicenseMetagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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schwede / ma-wilkins-import
MIT LicenseTools to import models of the Wilkins group (Tara) to ModelArchive
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schwede / ligand-validation
Apache License 2.0Extract ligand and binding site information from PDB X-ray validation reports
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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Bienchen / iplt
GNU General Public License v3.0 onlyCopy of of the original IPLT repository
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zavolan_group / pipelines / FragIt
Apache License 2.0Peptide identification and quantification from MS data.
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