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General purpose Snakemake RNA-seq analysis workflow

Material and data for the workshop in South Africa (2018)

Data integration and annotation workflows

A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".

Associated publication: https://doi.org/10.3389/fmicb.2021.633396

Riboseq Pipeline

QMEAN - Qualitative Model Energy ANalysis

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

🐍 ☕ 🔩 🔧 A collection of commonly used Python helper functions.

A Snakemake workflow to assemble genomes from long reads and annotate them

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

Tools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.

MIRZA-G pipeline code written for Jobber.

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

Tools to import models of the Wilkins group (Tara) to ModelArchive