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General purpose Snakemake RNA-seq analysis workflow
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A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".
Associated publication: https://doi.org/10.3389/fmicb.2021.633396
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☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.Updated -
An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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Tools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.
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Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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Tools to import models of the Wilkins group (Tara) to ModelArchive
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Extract ligand and binding site information from PDB X-ray validation reports
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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