The test on SLURM has failed
I tried to run the SLURM test and it has failed on two rules: generate_segemehl_index_genome
and create_header_genome.log
. The error is similar for both:
[Thu May 20 18:46:38 2021]
rule create_header_genome:
input: results/homo_sapiens/GRCh38.98_chrY/genome.processed.fa
output: results/homo_sapiens/GRCh38.98_chrY/headerOfCollapsedFasta.sam
log: logs/local/homo_sapiens/GRCh38.98_chrY/create_header_genome.log
jobid: 0
wildcards: organism=homo_sapiens, prefix_name=GRCh38.98_chrY
(samtools dict -o results/homo_sapiens/GRCh38.98_chrY/headerOfCollapsedFasta.sam results/homo_sapiens/GRCh38.98_chrY/genome.processed.fa) &> logs/local/homo_sapi
Activating singularity image /scicore/home/zavolan/boersch/HummingBird/test_pipeline/mir-prepare-annotation/test/.snakemake/singularity/cb1f9bedc773b733274e018d1
ESC[91mERROR : Unknown image format/type: /scicore/home/zavolan/boersch/HummingBird/test_pipeline/mir-prepare-annotation/test/.snakemake/singularity/cb1f9bedc77
[Thu May 20 18:48:18 2021]
rule generate_segemehl_index_genome:
input: results/homo_sapiens/GRCh38.98_chrY/genome.processed.fa
output: results/homo_sapiens/GRCh38.98_chrY/genome_index_segemehl.idx
log: logs/local/homo_sapiens/GRCh38.98_chrY/generate_segemehl_index_genome.log
jobid: 0
wildcards: organism=homo_sapiens, prefix_name=GRCh38.98_chrY
resources: mem=60, threads=8, time=6
(segemehl.x -x results/homo_sapiens/GRCh38.98_chrY/genome_index_segemehl.idx -d results/homo_sapiens/GRCh38.98_chrY/genome.processed.fa) &> logs/local/homo_sapie
Activating singularity image /scicore/home/zavolan/boersch/HummingBird/test_pipeline/mir-prepare-annotation/test/.snakemake/singularity/a5c38fb40ade7106d1f9686af
ESC[91mERROR : Unknown image format/type: /scicore/home/zavolan/boersch/HummingBird/test_pipeline/mir-prepare-annotation/test/.snakemake/singularity/a5c38fb40ad