refactor: read samples from table

Refactor workflow files to use a sample table as input.
Modify config.yaml to contain samples table pathway.
Add samples table file.
Add new directory config.
Fixes #26 (closed)

changed milestone to %Reevaluate quantification design

added Doing enhancement labels

changed title from refactor: modify pipeline to use a sample table as input to refactor: read samples from table

approved this merge request

merged