Update docs

I was testing Zarp by following README and discovered that several instructions should be corrected:

  1. The virtual environment install/environment.yml is not enough if the sample table contains files that should be concatenated. In this case install/environment.dev.yml is also required (unzip package?). Possible solution: merging these two .yml files into one.
  2. In the section "Running the workflow on your own samples", item 4 the snakemake command is described. There are two problems. First, the path to the Snakefile is wrong. It should be ../../Snakefile. Second, for processing real samples on SLURM an additional option --latency-wait 60 is required. With this option the system waits given seconds if an output file of a job is not present after the job finished. This helps if your filesystem suffers from latency (currently, it is the case).
Edited Jun 25, 2020 by Alex Kanitz
Assignee Loading
Time tracking Loading