Input parser

This branch contains input_parser.py which takes as input a labkey file and based on a entry_dictionary.tsv dictionary produces a config file and a samples table to trigger the snakelike workflow. closes #39 (closed)

changed title from Creation of input parser, that handles input files from labkey based on a dictionary to Input parser

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• e21aa1b8 - Build integration test for the input_parser.py

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• bac87cbb - added paths relative to home in all the test files

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• 178accdf - Changed home path in test_input.sh call

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• 07a69c45 - Changed home path with relative position in test_input.sh call

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• c2b25bb3 - Changed all paths to relative positions

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• 2a92a8f6 - Relative paths for testing input_parser.py

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• 4a978af3 - Added Biopython library via conda

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• 29356a88 - Made the conda installation not ask for confirmation and not display progress bar

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• 5fab0421 - Bash call instead of sh to test for conda library incosistency

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• 76673f4e - Changed biopython version

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• 2d4adfac - Added separate field for the conda env setup for biopython

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• 77567e75 - Fixed bug in the before_script addition of conda env

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• 003c2d87 - Python installation of packages

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• 163ad03a - test solf-contained and runs independent of environment

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• 48e7f18a - fix wrong path in GitLab CI config

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• ed58a988 - add test input files

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• 468a337f - remove unnecessary requirement

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• ca76b105 - remove unnecessary test files

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