Wire all available rules

Include the following rules:

• #7 (closed)
• #8 (closed)
• #9 (closed)
• #10 (closed)
• #11 (closed)
• #12 (closed)
• #13 (closed)
• #14 (closed)
• #15 (closed)
• #16 (closed)
• #17 (closed)

Tested for both single and paired end.