Remove sample specific options and use them as rule specific.
- Aug 20, 2021
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Maria Katsantoni authored
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Maria Katsantoni authored
Merge branch 'restructure_sample_table' of https://git.scicore.unibas.ch/zavolan_group/pipelines/zarp into restructure_sample_table
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- Jul 14, 2021
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BIOPZ-Katsantoni Maria authored
Merge branch 'dev' of ssh://git.scicore.unibas.ch:2222/zavolan_group/pipelines/zarp into restructure_sample_table
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BIOPZ-Katsantoni Maria authored
Partially solves issue #158. The features softclip, passmode, multimappers which were related to STAR are relocated to the rule config and given a default value. The documentation is updated and these options are removed from the immutable lists in the corresponding rules.
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