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Open-Source Computational Structural Biology Framework

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

Extract ligand and binding site information from PDB X-ray validation reports

ProMod3 - A Versatile Homology Modelling Toolbox

QMEAN - Qualitative Model Energy ANalysis

Material and data for the workshop in South Africa (2018)

General purpose Snakemake RNA-seq analysis workflow

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

Mobius - A python package for peptide optimization using Bayesian optimization

Copy of of the original IPLT repository

Python tool to reduce size and redundancy of phylogenetic datasets

Copy of of the original IPLT repository

TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).

scripts, pipelines and documentation to run PAQR and KAPAC

KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes

PAQR enables the quantification of poly(A) site usage from standard RNA-seq data