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TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).

General purpose Snakemake RNA-seq analysis workflow

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

🐍 ☕ 🔩 🔧 A collection of commonly used Python helper functions.

Wrapper repository for the entire Krini project

Extract ligand and binding site information from PDB X-ray validation reports

Riboseq Pipeline

Material and data for the workshop in South Africa (2018)

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

Python tool to reduce size and redundancy of phylogenetic datasets

Pathways allows you to compute importance scores for a a list of metabolic pathways.

Copy of of the original IPLT repository

scripts, pipelines and documentation to run PAQR and KAPAC

KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes

PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

Copy of of the original IPLT repository

Open-Source Computational Structural Biology Framework

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.