Explore projects
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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Python script that can be used to compress a directory including all its files and subdirectories.
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This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.
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Bienchen / iplt
GNU General Public License v3.0 onlyCopy of of the original IPLT repository
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TBRU / MetagenomicSnake
MIT LicenseMetagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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zavolan_public / PAQR_KAPAC
GNU General Public License v2.0 or laterscripts, pipelines and documentation to run PAQR and KAPAC
KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes
PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
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TBRU / pathways
MIT LicensePathways allows you to compute importance scores for a a list of metabolic pathways.
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TBRU / Treemmer
GNU General Public License v3.0 or laterPython tool to reduce size and redundancy of phylogenetic datasets
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imcf / noisee
GNU General Public License v3.0 onlyAn easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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schwede / ligand-validation
Apache License 2.0Extract ligand and binding site information from PDB X-ray validation reports
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☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.Updated -
zavolan_group / pipelines / ZARP
Apache License 2.0General purpose Snakemake RNA-seq analysis workflow
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