Explore projects
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zavolan_group / tools / zarp-cli
Apache License 2.0User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
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TBRU / MetagenomicSnake
MIT LicenseMetagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.
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TBRU / TBDARbiome cases
BSD 3-Clause "New" or "Revised" LicenseA public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".
Associated publication: https://doi.org/10.3389/fmicb.2021.633396
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zavolan_group / pipelines / FragIt
Apache License 2.0Peptide identification and quantification from MS data.
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Very simple role to disable selinux and reboot the machine
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zavolan_public / PAQR_KAPAC
GNU General Public License v2.0 or laterscripts, pipelines and documentation to run PAQR and KAPAC
KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes
PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
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TBRU / TACOS
Apache License 2.0TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).
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TBRU / Treemmer
GNU General Public License v3.0 or laterPython tool to reduce size and redundancy of phylogenetic datasets
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this is just an auxiliary repo to provide all scripts and auxiliary files that are part of the model pipeline
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Python script that can be used to compress a directory including all its files and subdirectories.
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