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ProMod3 - A Versatile Homology Modelling Toolbox

MIRZA-G pipeline code written for Jobber.

Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).

QMEAN - Qualitative Model Energy ANalysis

Python script that can be used to compress a directory including all its files and subdirectories.

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

Open-Source Computational Structural Biology Framework

Copy of of the original IPLT repository

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

scripts, pipelines and documentation to run PAQR and KAPAC

KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes

PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

Copy of of the original IPLT repository

Pathways allows you to compute importance scores for a a list of metabolic pathways.

Python tool to reduce size and redundancy of phylogenetic datasets

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

Material and data for the workshop in South Africa (2018)

Riboseq Pipeline

Extract ligand and binding site information from PDB X-ray validation reports

Wrapper repository for the entire Krini project

🐍 ☕ 🔩 🔧 A collection of commonly used Python helper functions.