Explore projects
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Open-Source Computational Structural Biology Framework
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The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.
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Extract ligand and binding site information from PDB X-ray validation reports
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Mobius - A python package for peptide optimization using Bayesian optimization
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General purpose Snakemake RNA-seq analysis workflow
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An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).
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Pathways allows you to compute importance scores for a a list of metabolic pathways.
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โ ๐ ๐ฌ Package for processing metadata from various light-microscopy related data formats.Updated -
Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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