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Open-Source Computational Structural Biology Framework

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

Extract ligand and binding site information from PDB X-ray validation reports

ProMod3 - A Versatile Homology Modelling Toolbox

General purpose Snakemake RNA-seq analysis workflow

Mobius - A python package for peptide optimization using Bayesian optimization

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

Material and data for the workshop in South Africa (2018)

QMEAN - Qualitative Model Energy ANalysis

MIRZA-G pipeline code written for Jobber.

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

Copy of of the original IPLT repository

Copy of of the original IPLT repository