Renamed meld to rawmodel

rawmodel/tests/test_raw_modeling.py

 """
-Unit tests for meld.
+Unit tests for rawmodel.
 """
 import unittest
-from promod3 import meld
+from promod3 import rawmodel
 from ost import conop, seq, io, mol
 
 class RawModelingTests(unittest.TestCase):
@@ -17,14 +17,14 @@ class RawModelingTests(unittest.TestCase):
         # test that BuildRawModel throws exception when no view is attached
         aln = seq.CreateAlignment(seq.CreateSequence('A', 'acdef'),
                                   seq.CreateSequence('B', 'ac-ef'))
-        self.assertRaises(RuntimeError, meld.BuildRawModel, aln)
+        self.assertRaises(RuntimeError, rawmodel.BuildRawModel, aln)
 
     def testModeledSequence(self):
         # test if the model has the sequence we want.
         tpl = io.LoadPDB('data/raw-modeling/gly.pdb')
         aln = io.LoadAlignment('data/raw-modeling/seq.fasta')
         aln.AttachView(1, tpl.CreateFullView())
-        result = meld.BuildRawModel(aln)
+        result = rawmodel.BuildRawModel(aln)
         seq1 = seq.SequenceFromChain('MODEL', result.model.chains[0])
         self.assertEqual(seq1.string, aln.sequences[0].string)
 
@@ -33,7 +33,7 @@ class RawModelingTests(unittest.TestCase):
         tpl = io.LoadPDB('data/raw-modeling/gly.pdb')
         aln = io.LoadAlignment('data/raw-modeling/del.fasta')
         aln.AttachView(1, tpl.CreateFullView())
-        result = meld.BuildRawModel(aln)
+        result = rawmodel.BuildRawModel(aln)
         residues = result.model.residues
         self.assertEqual(len(result.gaps), 1)
         self.assertEqual(result.gaps[0].before, residues[2])
@@ -45,7 +45,7 @@ class RawModelingTests(unittest.TestCase):
         tpl = io.LoadPDB('data/raw-modeling/gly.pdb')
         aln = io.LoadAlignment('data/raw-modeling/ins.fasta')
         aln.AttachView(1, tpl.CreateFullView())
-        result = meld.BuildRawModel(aln)
+        result = rawmodel.BuildRawModel(aln)
         residues = result.model.residues
         self.assertEqual(len(result.gaps), 1)
         self.assertEqual(result.gaps[0].before, residues[1])
@@ -58,7 +58,7 @@ class RawModelingTests(unittest.TestCase):
         tpl = io.LoadPDB('data/raw-modeling/gly.pdb')
         aln = io.LoadAlignment('data/raw-modeling/ter.fasta')
         aln.AttachView(1, tpl.CreateFullView())
-        result = meld.BuildRawModel(aln)
+        result = rawmodel.BuildRawModel(aln)
         residues = result.model.residues
         self.assertEqual(len(result.gaps), 2)
         self.assertEqual(result.gaps[0].before, mol.ResidueHandle())
@@ -73,7 +73,7 @@ class RawModelingTests(unittest.TestCase):
         tpl = io.LoadPDB('data/raw-modeling/sep.pdb')
         aln = io.LoadAlignment('data/raw-modeling/sep.fasta')
         aln.AttachView(1, tpl.CreateFullView())
-        result = meld.BuildRawModel(aln)
+        result = rawmodel.BuildRawModel(aln)
         residues = result.model.residues
         self.assertEqual(len(residues), 1)
         self.assertEqual(len(residues[0].atoms), 6)
@@ -89,7 +89,7 @@ class RawModelingTests(unittest.TestCase):
         tpl = io.LoadPDB('data/raw-modeling/cbeta.pdb')
         aln = io.LoadAlignment('data/raw-modeling/cbeta.fasta')
         aln.AttachView(1, tpl.CreateFullView())
-        result = meld.BuildRawModel(aln)
+        result = rawmodel.BuildRawModel(aln)
         residues = result.model.residues
         self.assertFalse(residues[0].FindAtom("CB").IsValid())
         self.assertFalse(residues[1].FindAtom("CB").IsValid())