refactor: merge prepare, map & quantify workflows

Iris Mestres Pascualrequested to merge
25-merge-workflows into dev

Closes #25 (closed)

  • trigger workflows prepare.smk, map.smk and quantify.smk from a single Snakefile
  • the separation over three files is conserved; each file is imported in the Snakefile
  • use a single config.yaml file to trigger the entire run (preparation, mapping & quantification)
Edited by Alex Kanitz

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