refactor: merge prepare, map & quantify workflows (!20) · Merge requests · zavolan_group / pipelines / mirflowz · GitLab

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Iris Mestres Pascual requested to merge 25-merge-workflows into dev Jan 17, 2023

Closes #25 (closed)

trigger workflows prepare.smk, map.smk and quantify.smk from a single Snakefile
the separation over three files is conserved; each file is imported in the Snakefile
use a single config.yaml file to trigger the entire run (preparation, mapping & quantification)

Edited Jan 20, 2023 by Alex Kanitz