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Refactor: Use only local files. Use chr19 in test_files.

Iris Mestres Pascual requested to merge 34-use-local-files into dev

Change config.yaml, prepare.smk, genome_process.sh and filter_anno_gtf.sh to use local files.
Add new annotation test files for chr19.
Change .md5 to these new outputs.

Closes #34

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