Replace test files with small synthetic ones
- replaces existing larger libraries and annotations in test cases
test_create_dag_chart
andtest_integration_workflow
- adds the following new test files:
-
chr1-10000-20000.fa
: artificial chromosome of length 10'000 (based on human chromosome 1) -
chr1-10000-20000.gtf
: matching gene annotation file with two gene and three multi-exon transcripts entries -
chr1-10000-20000.transcripts.fa
: sequences of the transcripts listed in the gene annotation file -
synthetic.mate_?.fastq.gz
: 10 read pairs randomly sampled from the genic regions of the artificial chromosome -
synthetic.*.bed
: BED files with expected alignments for each read; names of overlapping genes are specified in a 7th column
-
- updates file paths in the relevant sample tables
- extends and updates checksum checking of result files in CI/CD pipeline
Edited by Alex Kanitz