Replace test files with small synthetic ones
- replaces existing larger libraries and annotations in test cases
test_create_dag_chartandtest_integration_workflow - adds the following new test files:
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chr1-10000-20000.fa: artificial chromosome of length 10'000 (based on human chromosome 1) -
chr1-10000-20000.gtf: matching gene annotation file with two gene and three multi-exon transcripts entries -
chr1-10000-20000.transcripts.fa: sequences of the transcripts listed in the gene annotation file -
synthetic.mate_?.fastq.gz: 10 read pairs randomly sampled from the genic regions of the artificial chromosome -
synthetic.*.bed: BED files with expected alignments for each read; names of overlapping genes are specified in a 7th column
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- updates file paths in the relevant sample tables
- extends and updates checksum checking of result files in CI/CD pipeline
Edited by Alex Kanitz