Use minified docker images
use images based on Dockerfiles generated with the following external PRs:
- https://github.com/zavolanlab/Dockerfiles/pull/63
- https://github.com/zavolanlab/Dockerfiles/pull/64
- https://git.scicore.unibas.ch/zavolan_group/tools/tin_score_calculation/merge_requests/5
- https://git.scicore.unibas.ch/zavolan_group/tools/gtf_transcript_type_to_bed12/merge_requests/2
workflow now uses the following images:
zavolab/cutadapt:1.16-slim
-
zavolab/fastqc:0.11.9-slim
(bumped from0.11.8
) zavolab/gtf_transcript_type_to_bed12:0.1.0-slim
zavolab/kallisto:0.46.1-slim
-
zavolab/salmon:1.1.0-slim
(bumped from0.11.0
) -
zavolab/samtools:1.10-slim
(bumped from1.8
) -
zavolab/star:2.7.3a-slim
(bumped from2.6.0a
) zavolab/tin_score_calculation:0.1.0-slim
Total compressed size of images reduced from 2153.03 MB to 560.93 MB (3.8x smaller)
Closes #67 (closed)
Edited by Alex Kanitz