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Simplify star_rpm & index_genomic_alignment_samtools.

BIOPZ-Gypas Foivos requested to merge combine_star_rpm_rule into master

Merged paired-end and single-end rules for star_rpm and index_genomic_alignment_samtools. Fixed wiring of calculate_TIN_scores: bam is now input and not params. Removed unused file images/workflow_dag.svg

Edited by BIOPZ-Gypas Foivos

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