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Update salmon transcriptome index generation

Merged Update salmon transcriptome index generation
new_salmon_index into master
2 unresolved threads
Merged BIOPZ-Bak Maciej requested to merge new_salmon_index into master
2 unresolved threads
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tests/test_integration_workflow/expected_output.md5
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cbaebdb67aee4784b64aff7fec9fda42 results/kallisto_indexes/homo_sapiens/kallisto.idx
cbaebdb67aee4784b64aff7fec9fda42 results/kallisto_indexes/homo_sapiens/kallisto.idx
0ac1afd9a4f380afd70be75b21814c64 results/salmon_indexes/homo_sapiens/31/salmon.idx/versionInfo.json
0ac1afd9a4f380afd70be75b21814c64 results/salmon_indexes/homo_sapiens/31/salmon.idx/versionInfo.json
51b5292e3a874119c0e1aa566e95d70c results/salmon_indexes/homo_sapiens/31/salmon.idx/duplicate_clusters.tsv
51b5292e3a874119c0e1aa566e95d70c results/salmon_indexes/homo_sapiens/31/salmon.idx/duplicate_clusters.tsv
4c1ab7841bbd1a1e8e3b15e7750ecc38 results/salmon_indexes/homo_sapiens/31/salmon.idx/info.json
7f8679a6e6622e1b611642b5735f357c results/salmon_indexes/homo_sapiens/31/salmon.idx/info.json
dee7cdc194d5d0617552b7a3b5ad8dfb results/star_indexes/homo_sapiens/75/STAR_index/chrLength.txt
dee7cdc194d5d0617552b7a3b5ad8dfb results/star_indexes/homo_sapiens/75/STAR_index/chrLength.txt
8e2e96e2d6b7f29940ad5de40662b7cb results/star_indexes/homo_sapiens/75/STAR_index/chrNameLength.txt
8e2e96e2d6b7f29940ad5de40662b7cb results/star_indexes/homo_sapiens/75/STAR_index/chrNameLength.txt
d0826904b8afa45352906ad9591f2bfb results/star_indexes/homo_sapiens/75/STAR_index/chrName.txt
d0826904b8afa45352906ad9591f2bfb results/star_indexes/homo_sapiens/75/STAR_index/chrName.txt