MultiQC plugins for TIN scores and ALFA

Substitute injected .png's for ALFA and TIN scores with our custom MultiQC plugins (repo).

Notable points:

• Adjusted MultiQC rule to use our new container.
• Removed 2/3 rules on both sides (ALFA, TIN): we do not need any merging, plotting, image concatenation etc. what is left is just the calculation of respective scores.
• Pipeline documentation updated accordingly to (1)
• Quasi-unit/quasi-integration test for ALFA turned off in the CI. I see that this test was initially calling Snakemake to run 3 ALFA-related rules and generate the final ALFA plots. Since now for ALFA we have only one rule and the main output are per-sample TSV table a "separate 1-rule Snakemake call" is not necessary. Proper unit testing of this functionality should be a bash ALFA call but on a separate input, since everything else (evaluation of wildcards, jobs parallelization) is taken care of in the integration testing.

I will attach here a report after GCN4_project analysis, so that you may take a look at plugins in action: multiqc_summary.zip

@katsanto @gypas @kanitz