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Commit 32251687 authored by Christoph Stritt's avatar Christoph Stritt
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added string qutations in cluster config

parent 2d5e9228
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cluster:
mkdir -p logs/{rule} &&
sbatch
--partition={resources.partition}
--qos={resources.qos}
--cpus-per-task={threads}
--mem={resources.mem_mb}
--job-name=assemblySMK-{rule}-{wildcards}
--output=logs/{rule}/{rule}-{wildcards}-%j.stdout
--error=logs/{rule}/{rule}-{wildcards}-%j.stderr
default-resources:
- partition='scicore'
- qos='1day'
- time=12:00:00
- mem_mb=20000
restart-times: 3
max-jobs-per-second: 10
max-status-checks-per-second: 1
local-cores: 1
latency-wait: 60
jobs: 500
keep-going: True
rerun-incomplete: True
printshellcmds: True
scheduler: greedy
use-conda: True
# https://github.com/jdblischak/smk-simple-slurm
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