Workshop day -1

workshop/A_create_graph.ipynb

workshop/B_call_variants.ipynb

workshop/C_core_genome_alignment.ipynb

workshop/D_categorize_SVs.ipynb

workshop/D_graph_annotation.ipynb

workshop/E_gene_conversion.ipynb

workshop/F_categorize_SVs.ipynb

workshop/F_large_duplications.ipynb

workshop/README.md

workshop/data/H37Rv/DR_genes_coordinates.tsv

workshop/data/H37Rv/GCF_000195955.2_ASM19595v2_genomic.fna

workshop/data/H37Rv/GCF_000195955.2_ASM19595v2_genomic.gff

workshop/data/H37Rv/H37Rv.TBD1_flanking.fasta

workshop/data/H37Rv/H37Rv.nucmer_repeats_id90_l50.tsv

workshop/data/H37Rv/cds_from_genomic.simplified.fasta

workshop/data/MTBC.L1.assemblies.fasta

workshop/data/PacBio_workshop_metadata.tsv

workshop/data/assembly_summaries.tsv

workshop/data/cds_from_genomic.fna

workshop/data/input_file_L1_samples.tsv