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- .gitignore 2 additions, 0 deletions.gitignore
- config/environment.yml 4 additions, 0 deletionsconfig/environment.yml
- workshop/A_create_graph.ipynb 314 additions, 963 deletionsworkshop/A_create_graph.ipynb
- workshop/B_call_variants.ipynb 508 additions, 19 deletionsworkshop/B_call_variants.ipynb
- workshop/C_core_genome_alignment.ipynb 172 additions, 103 deletionsworkshop/C_core_genome_alignment.ipynb
- workshop/D_graph_annotation.ipynb 108 additions, 1 deletionworkshop/D_graph_annotation.ipynb
- workshop/E_gene_conversion.ipynb 129 additions, 0 deletionsworkshop/E_gene_conversion.ipynb
- workshop/F_categorize_SVs.ipynb 48 additions, 0 deletionsworkshop/F_categorize_SVs.ipynb
- workshop/G_large_duplications.ipynb 20 additions, 0 deletionsworkshop/G_large_duplications.ipynb
- workshop/README.md 12 additions, 9 deletionsworkshop/README.md
- workshop/data/DR_genes_coordinates.tsv 51 additions, 0 deletionsworkshop/data/DR_genes_coordinates.tsv
- workshop/data/H37Rv.nucmer_repeats_id90_l50.tsv 227 additions, 0 deletionsworkshop/data/H37Rv.nucmer_repeats_id90_l50.tsv
- workshop/data/cds_from_genomic.fna 55317 additions, 0 deletionsworkshop/data/cds_from_genomic.fna
- workshop/data/cds_from_genomic.simplified.fasta 71778 additions, 0 deletionsworkshop/data/cds_from_genomic.simplified.fasta
- workshop/data/dataprep.ipynb 3970 additions, 0 deletionsworkshop/data/dataprep.ipynb
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