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TBRU
PacbioSnake
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0e6b4603da9ff7c9966d1b54f0e4453cf9b2bb17
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3
main
protected
rs2
scicore
default
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Created with Raphaël 2.2.0
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Workshop day 0
scicore
scicore
Workshop day -1
Workshop continued...
Merge branch 'scicore' of https://git.scicore.unibas.ch/TBRU/PacbioSnake into scicore
Merge branch 'revert-116f3f4c' into 'scicore'
Revert "minor changes"
Workshop material added
minor changes
... and from the rename rule
removed biopython from circlator_removeduplicates
Workshop created
Pangenome graph notebook added
Duplicate read removal step added in circularize rule
Updated README and folder structure
Assembly pipeline including a short-read polishing step, for older PacBio Reads
rs2
rs2
cluster config again
more quotes...
added string qutations in cluster config
Fixed cluster config location
Fixed wrapper
yaml import removed
Merge branch 'revert-0d6ddf81' into 'scicore'
Revert "Merge branch 'scicore' of https://git.scicore.unibas.ch/TBRU/PacbioSnake into scicore"
Merge branch 'scicore' of https://git.scicore.unibas.ch/TBRU/PacbioSnake into scicore
added polishing iterations parameter for flye
First working version
Wrapper for execution on sciCORE
Simplified version with wrapper for sciCORE
Snakefile updated
main
main
container path added to config
variantcalling works now
Paths fixed, works on sciCORE now
Parameter outdir added to config
README updates and some file shuffling
initial commit
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