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Created with Raphaël 2.2.05Nov4330Oct11Jul511Jun19Mar16Jan16Nov151424Oct1918228SepWorkshop day 0scicorescicoreWorkshop day -1Workshop continued...Merge branch 'scicore' of https://git.scicore.unibas.ch/TBRU/PacbioSnake into scicoreMerge branch 'revert-116f3f4c' into 'scicore'Revert "minor changes"Workshop material addedminor changes... and from the rename ruleremoved biopython from circlator_removeduplicatesWorkshop createdPangenome graph notebook addedDuplicate read removal step added in circularize ruleUpdated README and folder structureAssembly pipeline including a short-read polishing step, for older PacBio Readsrs2rs2cluster config againmore quotes...added string qutations in cluster configFixed cluster config locationFixed wrapperyaml import removedMerge branch 'revert-0d6ddf81' into 'scicore'Revert "Merge branch 'scicore' of https://git.scicore.unibas.ch/TBRU/PacbioSnake into scicore"Merge branch 'scicore' of https://git.scicore.unibas.ch/TBRU/PacbioSnake into scicoreadded polishing iterations parameter for flyeFirst working versionWrapper for execution on sciCORESimplified version with wrapper for sciCORESnakefile updatedmainmaincontainer path added to configvariantcalling works nowPaths fixed, works on sciCORE nowParameter outdir added to configREADME updates and some file shufflinginitial commit