Commits · master · TBRU / pathways · GitLab

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Nov 23, 2022
- Merge branch 'ticlla-master-patch-73216' into 'master' · e442be71
  Ticlla Ccenhua Monica Roxana authored 2 years ago
  
  adding alternative name of tool in the Readme. See merge request !1
  e442be71
- adding alternative name of tool in the Readme. · 7f6316b7
  Ticlla Ccenhua Monica Roxana authored 2 years ago
  
  7f6316b7
Aug 28, 2019
- update installation instructions to use intel"s python 3.6 distribution · bb50041e
  Ticlla Ccenhua Monica Roxana authored 5 years ago
  
  bb50041e
- adjust code to use regular ndarray instead of matrix subclass which wil be deprecated · 14938a31
  Ticlla Ccenhua Monica Roxana authored 5 years ago
  
  14938a31
- set interpolation to none in heatmap function for it to work with python 3.6 · 272ebafe
  Ticlla Ccenhua Monica Roxana authored 5 years ago
  
  272ebafe
- put test requirements · a5208aa7
  Ticlla Ccenhua Monica Roxana authored 5 years ago
  
  a5208aa7
May 16, 2019
- remove/comment unused code statements · bf39e113
  Ticlla Ccenhua Monica Roxana authored 5 years ago
  
  bf39e113
- Update example on dataset from Georgia, compute ratios for pathways ranked in... · 8282dfdb
  Ticlla Ccenhua Monica Roxana authored 5 years ago
  
  Update example on dataset from Georgia, compute ratios for pathways ranked in clustered MDR+ strains against non-clustered ones
  8282dfdb
Dec 13, 2018
- Update example on dataset from georgia, analysis per DR group includes only clustered strains · 0a2384b3
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  0a2384b3
- update example analysis on dataset from georgia. New updated list of SNPs · a59d4bbb
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  a59d4bbb
Nov 12, 2018
- update example analysis on the dataset from Georgia, updated list of SNPs correctly flags DR SNPs · 1738e340
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  1738e340
Sep 27, 2018
- minor addition to instructions for installation · 2930297d
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  2930297d
Sep 26, 2018
- issue with installation, get igraph from conda-forge repository · e646d92f
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  e646d92f
Sep 24, 2018
- minor additions to notebook on analysis of the retrospective MDR collection from Georgia · 72b73546
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  72b73546
- rename method to plot scores of genes in significant, filter list of genes by... · f7c4c590
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  rename method to plot scores of genes in significant, filter list of genes by coverage of raw score. Delete redundant method
  f7c4c590
Sep 20, 2018
- update instractions for installation · 9e691a2f
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  9e691a2f
- minor change to package requirements · 166f34f5
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  166f34f5
- correct paths to GitLab repository · 0d9c2f81
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  0d9c2f81
Aug 29, 2018
- add description of methodology to notebook examples/pathwayRelevance_Gerogia_Transmission.ipynb · 1f6b7790
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  1f6b7790
Aug 15, 2018
- includes pathway relevance analysis per DR class · f07bfeef
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  f07bfeef
Aug 12, 2018
- pathway relevance analysis for samples in transmission clusters from Georgia(retrospective) · 057ee5da
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  057ee5da
- add methods to extract top ranked genes in pathways covering a certain... · a6a49d3d
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  add methods to extract top ranked genes in pathways covering a certain percentage of the total pathway raw score
  a6a49d3d
- Correct link to GitLab repo · 9732fa48
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  9732fa48
Aug 08, 2018
- corrects link to GitLab repo · add11943
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  add11943
- Pathways 0.1.0 · aa101061
  Ticlla Ccenhua Monica Roxana authored 6 years ago
  
  aa101061
Nov 04, 2017
- Initial skeleton · 660cc29a
  Ticlla Ccenhua Monica Roxana authored 7 years ago
  
  660cc29a