Notes for scores

convert_to_modelcif.py

@@ -117,7 +117,14 @@ def _store_as_modelcif(
         name="ToDo: Model <N> (ranked #<M>)",
     )
 
-    # ToDO: check data_json["model_group_name"] at Tara's
+    # process scores
+    # ToDo: Get scores, but where are they stored? For other AF2 related
+    #       projects, there are JSON or Pickle files with all AF2 scores
+    # system.repositories.append(
+    #     model.add_scores(data_json, system.id, mdl_name, add_files)
+    # )
+
+    # ToDo: check data_json["model_group_name"] at Tara's
     system.model_groups.append(modelcif.model.ModelGroup([model]))
 
     # ToDo: get protocol steps together
@@ -360,6 +367,7 @@ if __name__ == "__main__":
 #       'data_', '_entry', maybe have a user-defined JSON document with things
 #       like that, including author names?
 # ToDo: where to store which model was chosen? Should be in Tara's models.
+# ToDo: make sure all functions come with types
 
 #  LocalWords:  ToDo AlphaPulldown PAEs dir struct coevolution MSA py modeling
 #  LocalWords:  multimer sif Jupyter