Explore projects
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schwede / ligand-validation
Apache License 2.0Extract ligand and binding site information from PDB X-ray validation reports
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vamp / auto-tx
GNU General Public License v3.0 onlyA Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.
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zavolan_group / pipelines / ZARP
Apache License 2.0General purpose Snakemake RNA-seq analysis workflow
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imcf / noisee
GNU General Public License v3.0 onlyAn easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).
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zavolan_group / pipelines / mirflowz
MIT LicenseArchived 0Updated -
Jean-Guillaume Piccinali / SPH-EXA_mini-app
MIT LicenseUpdated -
☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.Updated -
TBRU / TBDARbiome cases
BSD 3-Clause "New" or "Revised" LicenseA public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".
Associated publication: https://doi.org/10.3389/fmicb.2021.633396
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Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021
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zavolan_group / tools / ascii-alignment-pileup
Apache License 2.0Generates an ASCII-style pileup of read alignments in one or more BAM files against one or more regions specified in a BED file
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Jean-Guillaume Piccinali / Mirror Test
GNU General Public License v3.0 or laterUpdated -
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schwede / ma-wilkins-import
MIT LicenseTools to import models of the Wilkins group (Tara) to ModelArchive
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zavolan_group / pipelines / Bind-n-Seq PWMs
MIT LicenseUpdated