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Extract ligand and binding site information from PDB X-ray validation reports

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

General purpose Snakemake RNA-seq analysis workflow

QMEAN - Qualitative Model Energy ANalysis

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

Material and data for the workshop in South Africa (2018)

Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".

Associated publication: https://doi.org/10.3389/fmicb.2021.633396

Coordinate Storage - Macromolecules made accessible

Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021

Generates an ASCII-style pileup of read alignments in one or more BAM files against one or more regions specified in a BED file

Tools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.

Data integration and annotation workflows