Explore projects

Extract ligand and binding site information from PDB X-ray validation reports

Material and data for the workshop in South Africa (2018)

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

QMEAN - Qualitative Model Energy ANalysis

General purpose Snakemake RNA-seq analysis workflow

Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".

Associated publication: https://doi.org/10.3389/fmicb.2021.633396

Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021

Generates an ASCII-style pileup of read alignments in one or more BAM files against one or more regions specified in a BED file

Data integration and annotation workflows

Tools to import models of the Wilkins group (Tara) to ModelArchive