Explore projects

Riboseq Pipeline

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

scripts, pipelines and documentation to run PAQR and KAPAC

KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes

PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

Pathways allows you to compute importance scores for a a list of metabolic pathways.

Python tool to reduce size and redundancy of phylogenetic datasets

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

Wrapper repository for the entire Krini project

TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).

Copy of of the original IPLT repository

Copy of of the original IPLT repository

MIRZA-G pipeline code written for Jobber.