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Comparative assessment of methods for the computational inference of transcript isoform from RNA-seq data. Submitted to Genome Biology (03-2015).

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

imcf-adaptation of Myosoft, a Fiji script that identifies muscle fibers in images of sections

Fast non-sensitive protein sequence searches

Copy of of the original IPLT repository

Tools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.

Python script that can be used to compress a directory including all its files and subdirectories.

Data integration and annotation workflows