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This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

Tools/ code/ Dockerfiles... used to convert user projects into ModelCIF for upload to ModelArchive. Grown over time/ with every project.

Copy of of the original IPLT repository

Python script that can be used to compress a directory including all its files and subdirectories.

imcf-adaptation of Myosoft, a Fiji script that identifies muscle fibers in images of sections