Explore projects
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schwede / af2-at-scicore
MIT LicenseRun the AlphaFold2 pipeline on the sciCORE cluster... provided by the SWISS-MODEL team ;)
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xml input files for Beast, associated with manuscript: The Molecular Clock of Mycobacterium tuberculosis. DOI: https://doi.org/10.1371/journal.ppat.1008067
Analysis with exponential growth population prior, and 1/x prior on the clock rate
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zavolan_group / tools / zarp-cli
Apache License 2.0User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
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Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021
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vamp / Citrix Collector
GNU General Public License v3.0 or laterPowerShell based collector of Citrix metrics for Prometheus (creating a textfile for the windows_exporter).
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TBRU / TBDARbiome cases
BSD 3-Clause "New" or "Revised" LicenseA public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".
Associated publication: https://doi.org/10.3389/fmicb.2021.633396
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imcf / myosoft-imcf
GNU General Public License v3.0 onlyimcf-adaptation of Myosoft, a Fiji script that identifies muscle fibers in images of sections
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zavolan_group / pipelines / FragIt
Apache License 2.0Peptide identification and quantification from MS data.
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Very simple role to disable selinux and reboot the machine
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TBRU / TACOS
Apache License 2.0TACOS is a diverse Set Of Commands And Tools (SOCAT, but TACOS sounds much better!).
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this is just an auxiliary repo to provide all scripts and auxiliary files that are part of the model pipeline
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zavolan_group / pipelines / ZARP
Apache License 2.0General purpose Snakemake RNA-seq analysis workflow
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☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.Updated