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Tools to import models of the Wilkins group (Tara) to ModelArchive

scripts and tools to evaluate monochrome cameras (for microscopy)

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021

A collection of commonly used Python helper functions.

Package for processing metadata from various light-microscopy related data formats.

xml input files for Beast, associated with manuscript: The Molecular Clock of Mycobacterium tuberculosis. DOI: https://doi.org/10.1371/journal.ppat.1008067

Analysis with exponential growth population prior, and 1/x prior on the clock rate

PowerShell based collector of Citrix metrics for Prometheus (creating a textfile for the windows_exporter).

User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline

Metagenomics pipeline for human microbiome analysis with SnakeMake and singularity containers.

A public repository of the study "The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study within a prospective human cohort in Tanzania (TB-DAR)".

Associated publication: https://doi.org/10.3389/fmicb.2021.633396

Benchmark pipelines for the ProMod3 modelling engine

Peptide identification and quantification from MS data.