Explore projects

The projects implements a simulation of single cell RNA sequencing (scRNA-seq), accounting for some common sources noise that complicate the analysis of the resulting data.

Run the AlphaFold2 pipeline on the sciCORE cluster... provided by the SWISS-MODEL team ;)

General purpose Snakemake RNA-seq analysis workflow

Pathways allows you to compute importance scores for a a list of metabolic pathways.

Tools to import models of the Wilkins group (Tara) to ModelArchive

scripts and tools to evaluate monochrome cameras (for microscopy)

This project contains all scripts and descriptions to enable the execution of a streamlined pipeline that processes A-seq2 read libraries up to the reporting of individual and clustered 3' end processing sites.

Fork of the cathsm-server repo (https://github.com/CATH-SWISSMODEL/cathsm-server) for the tutorial "Beyond the usual Docker tutorial - Web apps & CI" at [BC]^2 Conference 2021

🐍 ☕ 🔩 🔧 A collection of commonly used Python helper functions.